Publications

publications by categories in reversed chronological order. generated by jekyll-scholar.

2025

  1. MIR_2025_YeWu.png
    Edge-aware feature aggregation network for polyp segmentation
    Tao Zhou, Yizhe Zhang, Geng Chen, and 3 more authors
    Machine Intelligence Research, 2025
  2. VI_2025_YeWu.png
    A survey on deep learning for polyp segmentation: Techniques, challenges and future trends
    Jiaxin Mei, Tao Zhou, Kaiwen Huang, and 4 more authors
    Visual Intelligence, 2025
  3. CMIG_2025_YeWu.png
    DDEvENet: Evidence-based ensemble learning for uncertainty-aware brain parcellation using diffusion MRI
    Chenjun Li, Dian Yang, Shun Yao, and 8 more authors
    Computerized Medical Imaging and Graphics, 2025
  4. CM_2025_YeWu.png
    Revealing excitation-inhibition imbalance in Alzheimer’s disease using multiscale neural model inversion of resting-state functional MRI
    Guoshi Li, Li-Ming Hsu, Ye Wu, and 3 more authors
    Communications Medicine, 2025
  5. EJR_2025_YeWu.png
    Soma and neurite density imaging detects brain microstructural impairments in amyotrophic lateral sclerosis
    Jing-Yi Zeng, Hui-Wei Huang, Shao-Peng Zhuang, and 4 more authors
    European Journal of Radiology, 2025
  6. Arxiv_1_2025_YeWu.png
    Deep Learning-Based Diffusion MRI Tractography: Integrating Spatial and Anatomical Information
    Yiqiong Yang, Yitian Yuan, Baoxing Ren, and 3 more authors
    arXiv preprint arXiv:2503.03329, 2025
  7. Arxiv_2_2025_YeWu.png
    A Novel Streamline-based diffusion MRI Tractography Registration Method with Probabilistic Keypoint Detection
    Junyi Wang, Mubai Du, Ye Wu, and 4 more authors
    arXiv preprint arXiv:2503.02481, 2025
  8. ISBI_2025_Jiahao.png
    Unsupervised Normative Learning for Quality Assessment on Diffusion MRI
    Jiahao Yu, Tenglong Wang, Yifei He, and 3 more authors
    In 2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI), 2025
  9. ISBI_2025_Yazhe.png
    Exploring Consistency of Connectome Across Species Using Inter-Bundle Topological Graph Network (ibTGN)
    Yazhe Zhai, Yu Xie, Yifei He, and 3 more authors
    In 2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI), 2025
  10. MO_2025_Junhao.png
    Toward diffusion MRI in the diagnosis and treatment of pancreatic cancer
    Junhao Lee, Tingting Lin, Yifei He, and 2 more authors
    Medical Oncology, 2025
  11. NeuroImage_Clinical_2025_YeWu.png
    Differential patterns of axonal loss associated with threat-related adversity in atypical depression and non-atypical depression
    Huifeng Zhang, Lei Ding, Lanxiang He, and 5 more authors
    NeuroImage: Clinical, 2025
  12. FR_2025_YeWu.png
    Recent advances in pediatric neuroradiology
    Sahar Ahmad, Yunzhi Huang, and Ye Wu
    Frontiers in Radiology, 2025
  13. KBS_2025_YeWu.png
    WeakPolyp-SAM: Segment Anything Model-driven weakly-supervised polyp segmentation
    Yiming Zhao, Tao Zhou, Yunqi Gu, and 4 more authors
    Knowledge-Based Systems, 2025
  14. JN_2025_YeWu.png
    Unified Framework for Oculomotor Nerve Reconstruction: Tractography-Based Anatomical Assessment
    Jiahao Huang, Qingrun Zeng, Ye Wu, and 5 more authors
    Journal of Neuroimaging, 2025
  15. CPB_2025_YeWu.png
    A novel baseline perspective visibility graph for time series analysis
    Ni Huang-Jing, Song Zi-Jie, Qin Jiao-Long, and 3 more authors
    Chinese Physics B, 2025
  16. JAD_2025_YeWu.png
    Association of aberrant gray matter neurite density with neurovegetative symptom in atypical depression
    Huifeng Zhang, Rubai Zhou, Wenxian Lu, and 8 more authors
    Journal of Affective Disorders, 2025

2024

  1. PR_2024_YeWu.png
    Cross-contrast mutual fusion network for joint MRI reconstruction and super-resolution
    Yue Ding, Tao Zhou, Lei Xiang, and 1 more author
    Pattern Recognition, 2024
  2. SR_2024_YeWu.png
    Voxelwise analysis of the central hearing pathway in senior dogs reveals changes associated with fractional lifespan
    Chin-Chieh Yang, Pew-Thian Yap, Ye Wu, and 5 more authors
    Scientific Reports, 2024
  3. TMI_2024_YeWu.png
    Domain-interactive Contrastive Learning and Prototype-guided Self-training for Cross-domain Polyp Segmentation
    Ziru Lu, Yizhe Zhang, Yi Zhou, and 2 more authors
    IEEE Transactions on Medical Imaging, 2024
  4. Arxiv_1_2024_YeWu.png
    MICCAI-CDMRI 2023 QuantConn Challenge Findings on Achieving Robust Quantitative Connectivity through Harmonized Preprocessing of Diffusion MRI
    Nancy R Newlin, Kurt Schilling, Serge Koudoro, and 8 more authors
    arXiv preprint arXiv:2411.09618, 2024
  5. FR_2024_YeWu.png
    Data Tells the Truth: A Knowledge Distillation Method for Genomic Survival Analysis by Handling Censoring
    Xiu-Shen Wei, He-Yang Xu, Ye Wu, and 4 more authors
    Fundamental Research, 2024
  6. JBHI_2024_YeWu.png
    Spherical harmonics-based deep learning achieves generalized and accurate diffusion tensor imaging
    Yunwei Chen, Jialong Li, Qiqi Lu, and 6 more authors
    IEEE Journal of Biomedical and Health Informatics, 2024
  7. Arxiv_2_2024_YeWu.png
    Reliable Deep Diffusion Tensor Estimation: Rethinking the Power of Data-Driven Optimization Routine
    Jialong Li, Zhicheng Zhang, Yunwei Chen, and 6 more authors
    arXiv preprint arXiv:2409.02492, 2024
  8. MICCAI_2024_YeWu.png
    TextPolyp: Point-Supervised Polyp Segmentation with Text Cues
    Yiming Zhao, Yi Zhou, Yizhe Zhang, and 2 more authors
    In International Conference on Medical Image Computing and Computer-Assisted Intervention, 2024
  9. No_Name_2024_YeWu.png
    Advanced Diffusion MRI in Developing Brain
    Ye Wu, Lanxiang He, Xinyuan Zhang, and 1 more author
    2024
  10. NeuroImage_2024_YeWu.png
    Spherical-deconvolution informed filtering of tractograms changes laterality of structural connectome
    Yifei He, Yoonmi Hong, and Ye Wu
    NeuroImage, 2024
  11. PRCV_2024_YeWu.png
    Combining Segment Anything Model with Domain-Specific Knowledge for Semi-Supervised Learning in Medical Image Segmentation
    Yizhe Zhang, Tao Zhou, Ye Wu, and 2 more authors
    In Chinese Conference on Pattern Recognition and Computer Vision (PRCV), 2024
  12. BIBM_2025_Tenglong.png
    Jointly Estimation of Microstructure Maps Across Acquisition Protocols
    Tenglong Wang, Jiahao Yu, Yiang Pan, and 3 more authors
    In 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2024
  13. BIBM_2025_XieYu.png
    FibGrid: Characterizing Anatomical Pathways in Hypergrid for Direct Tract Segmentation
    Yu Xie, Yazhe Zhai, Yifei He, and 3 more authors
    In 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2024
  14. ISMRM_2024_Tenglong.png
    Demonstration of TE-dependence of tissue microstructure estimation
    Tenglong Wang, Yifei He, Xiaoming Liu, and 6 more authors
    International Society for Magnetic Resonance in Medicine (ISMRM), 2024
  15. ISMRM_2024_Yifei.png
    Demonstration of TE-dependence of lateralization of structural connectomes
    Yifei He, Xiaoming Liu, Peng Sun, and 5 more authors
    International Society for Magnetic Resonance in Medicine (ISMRM), 2024
  16. JDAP_2024_Lanxiang.png
    弥散磁共振成像在中医诊疗中的机遇与挑战.
    吴烨, 和岚翔, 张鑫媛, and 3 more authors
    Journal of Data Acquisition & Processing/Shu Ju Cai Ji Yu Chu Li, 2024
  17. CP_2024_YeWu.png
    Simulation-based inference of developmental EEG maturation with the spectral graph model
    Danilo Bernardo, Xihe Xie, Parul Verma, and 8 more authors
    Communications Physics, 2024
  18. CNSNT_2024_YeWu.png
    Neurite orientation dispersion and density imaging quantifies microstructural impairment in the thalamus and its connectivity in amyotrophic lateral sclerosis
    Yun-Bin Cao, Ye Wu, Qiu-Yi Dong, and 3 more authors
    CNS Neuroscience & Therapeutics, 2024
  19. QIMS_2024_YeWu.png
    Distance-specific functional connectivity strength alterations in human immunodeficiency virus asymptomatic neurocognitive impairment patients: a cross-sectional study
    Jing Zhao, Ye Wu, Feng Chen, and 4 more authors
    Quantitative Imaging in Medicine and Surgery, 2024
  20. zhang2024testfit.jpg
    TestFit: A plug-and-play one-pass test time method for medical image segmentation
    Yizhe Zhang, Tao Zhou, Yuhui Tao, and 6 more authors
    Medical Image Analysis, 2024
  21. li2024diffusion.jpg
    A diffusion MRI tractography atlas for concurrent white matter mapping across Eastern and Western populations
    Yijie Li, Wei Zhang, Ye Wu, and 8 more authors
    Scientific Data, 2024
  22. lyu2024multimodal.jpg
    A multimodal submillimeter MRI atlas of the human cerebellum
    Wenjiao Lyu, Ye Wu, Khoi Minh Huynh, and 2 more authors
    Scientific reports, 2024
  23. wu2024open.png
    An open relaxation-diffusion MRI dataset in neurosurgical studies
    Ye Wu, Xiaoming Liu, Yunzhi Huang, and 2 more authors
    Scientific Data, 2024
  24. huynh2024optimal.jpg
    Optimal shrinkage denoising breaks the noise floor in high-resolution diffusion MRI
    Khoi Huynh, Wei-Tang Chang, Ye Wu, and 1 more author
    Patterns, 2024
  25. akter2024neuroscience.jpg
    Neuroscience for Neurosurgeons
    Farhana Akter, Nigel Emptage, Florian Engert, and 1 more author
    2024
  26. liuncertainty.jpg
    Uncertainty-Aware Anatomical Brain Parcellation using Diffusion MRI
    Chenjun Li, Ye Wu, Le Zhang, and 8 more authors
    2024
  27. licreation.jpg
    Creation of a cross-population white matter atlas for concurrent mapping of brain connections between Eastern and Western populations
    Yijie Li, Wei Zhang, Ye Wu, and 8 more authors
    2024
  28. ISBI_2024_YizheZhang.png
    Transduction Enhanced Inductive Inference for Imbalanced Classification in Medical Images
    Yizhe Zhang, Tao Zhou, Ye Wu, and 2 more authors
    In 2024 IEEE International Symposium on Biomedical Imaging (ISBI), 2024
  29. ISMRM_2024_YeWu.png
    Exploring the Potential Applications of Relaxation-Diffusion Spectrum Imaging in Neurosurgical Studies
    Ye Wu, Xiaoming Liu, Peng Sun, and 3 more authors
    International Society for Magnetic Resonance in Medicine (ISMRM), 2024
  30. ISBI_2024_YeWu.png
    SMNET: A Spherical Mean Network for Probing Tissue Microarchitecture from Single-Shell DMRI
    Ye Wu, Yue Ding, Xiaoming Liu, and 4 more authors
    In 2024 IEEE International Symposium on Biomedical Imaging (ISBI), 2024
  31. Spatially robust adaptive ensemble average propagator reconstruction via spherical polar Fourier imaging
    Xifeng Wang, Shangbang Rao, Jian Cheng, and 4 more authors
    Statistics and Its Interface, 2024

2023

  1. Arxiv_2023_YeWu.png
    Can sam segment polyps?
    Tao Zhou, Yizhe Zhang, Yi Zhou, and 2 more authors
    arXiv preprint arXiv:2304.07583, 2023
  2. CMJ_2023_YeWu.png
    Probing bundle-wise abnormalities in patients infected with human immunodeficiency virus using fixel-based analysis: new insights into neurocognitive impairments
    Jing Zhao, Bin Jing, Jiaojiao Liu, and 3 more authors
    Chinese Medical Journal, 2023
  3. FIN_2023_YeWu.png
    Altered isotropic volume fraction in gray matter after sleep deprivation and its association with visuospatial memory: A neurite orientation dispersion and density imaging study
    Jia-Hui Lin, Xu-Hui Chen, Ye Wu, and 3 more authors
    Frontiers in Neuroscience, 2023
  4. ICCAI_2023_YeWu.png
    Cross-contrast Fusion and Aggregation Network for Multi-contrast MRI Super-resolution
    Yue Ding, Tao Zhou, and Ye Wu
    In Proceedings of the 2023 9th International Conference on Computing and Artificial Intelligence, 2023
  5. spann2023art.png
    The art, science, and secrets of scanning young children
    Marisa N Spann, Jessica L Wisnowski, Banu Ahtam, and 8 more authors
    Biological psychiatry, 2023
  6. zhang2023samdsk.png
    Samdsk: Combining segment anything model with domain-specific knowledge for semi-supervised learning in medical image segmentation
    Yizhe Zhang, Tao Zhou, Shuo Wang, and 3 more authors
    arXiv preprint arXiv:2308.13759, 2023
  7. girard2023tractography.jpg
    Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge
    Gabriel Girard, Jonathan Rafael-Patiño, Raphaël Truffet, and 8 more authors
    NeuroImage, 2023
  8. zhao2023segment.png
    Segment anything model-guided collaborative learning network for scribble-supervised polyp segmentation
    Yiming Zhao, Tao Zhou, Yunqi Gu, and 4 more authors
    arXiv preprint arXiv:2312.00312, 2023
  9. chen2023brain.png
    Brain tissue segmentation across the human lifespan via supervised contrastive learning
    Xiaoyang Chen, Jinjian Wu, Wenjiao Lyu, and 6 more authors
    arXiv preprint arXiv:2301.01369, 2023
  10. lyu2023aberrant.jpg
    Aberrant dynamic functional network connectivity in type 2 diabetes mellitus individuals
    Wenjiao Lyu, Ye Wu, Haoming Huang, and 8 more authors
    Cognitive Neurodynamics, 2023
  11. dong2023white.jpg
    White matter microstructural disruption in minimal hepatic encephalopathy: a neurite orientation dispersion and density imaging (NODDI) study
    Qiu-Yi Dong, Jia-Hui Lin, Ye Wu, and 3 more authors
    Neuroradiology, 2023
  12. qin2023graph.jpg
    Graph analysis of diffusion tensor imaging-based connectome in young men with internet gaming disorder
    Jiaolong Qin, Shuai Wang, Huangjing Ni, and 6 more authors
    Frontiers in Neuroscience, 2023
  13. lyu2023alterations.jpg
    Alterations of peripheral cytokines, BDNF, and surface-based morphometry indices in T2DM patients without cognitive impairment
    Wenjiao Lyu, Yuna Chen, Kui Zhao, and 3 more authors
    2023
  14. huynh2023microstructure.png
    Microstructure fingerprinting for heterogeneously oriented tissue microenvironments
    Khoi Minh Huynh, Ye Wu, Sahar Ahmad, and 1 more author
    In International Conference on Medical Image Computing and Computer-Assisted Intervention, 2023
  15. wu2023relaxation.png
    Relaxation-diffusion spectrum imaging for probing tissue microarchitecture
    Ye Wu, Xiaoming Liu, Xinyuan Zhang, and 3 more authors
    In International Conference on Medical Image Computing and Computer-Assisted Intervention, 2023
  16. zhao2023probing.jpeg
    Probing bundle-wise abnormalities in patients infected with human immunodeficiency virus using fixel-based analysis: new insights into neurocognitive impairments
    Jing Zhao, Bin Jing, Jiaojiao Liu, and 3 more authors
    Chinese Medical Journal, 2023
  17. NatureMethods_2023_YeWu.png
    Multifaceted atlases of the human brain in its infancy
    Sahar Ahmad, Ye Wu, Zhengwang Wu, and 6 more authors
    Nature Methods, 2023
  18. FHN_2023_YeWu.png
    Corrigendum: Alterations via inter-regional connective relationships in Alzheimer’s disease
    Xiaomei Ren, Bowen Dong, Ying Luan, and 3 more authors
    Frontiers in Human Neuroscience, 2023
  19. ACM_MM_2023_YeWu.png
    Hawkeye: A PyTorch-based Library for Fine-Grained Image Recognition with Deep Learning
    Jiabei He, Yang Shen, Xiu-Shen Wei, and 1 more author
    In Proceedings of the 31st ACM International Conference on Multimedia, 2023

2022

  1. NeuroImage_2022_YeWu.png
    Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI
    Chiara Maffei, Gabriel Girard, Kurt G Schilling, and 8 more authors
    NeuroImage, 2022
  2. Arxiv_2022_YeWu.png
    Biomedical image analysis competitions: The state of current participation practice
    Matthias Eisenmann, Annika Reinke, Vivienn Weru, and 8 more authors
    arXiv preprint arXiv:2212.08568, 2022
  3. MLMI_workshop_2022_YeWu.png
    Harmonization of Multi-site Cortical Data Across the Human Lifespan
    Sahar Ahmad, Fang Nan, Ye Wu, and 6 more authors
    In International Workshop on Machine Learning in Medical Imaging, 2022
  4. li2022excitation.jpg
    Excitation-inhibition imbalance in Alzheimer’s disease using multiscale neural model inversion of resting-state fMRI
    Guoshi Li, Li-Ming Hsu, Ye Wu, and 3 more authors
    medRxiv, 2022
  5. xu2022rapid.jpg
    Rapid diffusion magnetic resonance imaging using slice-interleaved encoding
    Tiantian Xu, Ye Wu, Yoonmi Hong, and 6 more authors
    Medical image analysis, 2022
  6. wu2022superficial.png
    Superficial White Matter Tract Atlases Across the Human Lifespan
    Ye Wu and Pew-Thian Yap
    2022
  7. ahmad2022harmonization.jpg
    Harmonization of Multi-site Cortical Data Across the Human Lifespan
    Sahar Ahmad, Fang Nan, Ye Wu, and 6 more authors
    In International Workshop on Machine Learning in Medical Imaging, 2022
  8. wusubcortical.png
    Subcortical Parcellation of the Human Brain via Automated Voxel Annotation with Fiber Clusters
    Ye Wu, Sahar Ahmad, and Pew-Thian Yap
    2022
  9. wuintravoxel.jpeg
    Intravoxel Architecture Atlases (IAA) Across the Human Lifespan
    Ye Wu, Sahar Ahmad, and Pew-Thian Yap
    2022