2026

Journal

Superficial white matter microstructural impairments correlate with functional alterations and disease severity in early-stage amyotrophic lateral sclerosis

Shao-Peng Zhuang, Hui-Wei Huang, Jing-Yi Zeng, Jia-Yan Shi, Hong-Yu Lin, Sheng Chen, Ye Wu, Nao-Xin Huang, Zhang-Yu Zou, Hua-Jun Chen

La radiologia medica, 2026

Journal

Detailed Connectomic Cluster Resource for White Matter Mapping From Ultra-High-Field Diffusion MRI

Hiuying Yip, Yifei He, Yu Xie, Fan Zhang, Ye Wu

NeuroImage, 2026

Journal

Multi-organ network of cardiometabolic disease-depression multimorbidity revealed by phenotypic and genetic analyses of MR images

Jingxuan Wang, Mianxin Liu, Feng Liu, Guangrui Yang, Zhongshang Yuan, Hao Huang, Zixuan Zhang, Lilong Wang, Ye Wu, Wenliang Fan, others

Nature Communications, 2026

Journal

Constructing fine-grained subcortical atlases with connectional consensus graph representation learning

Zhonghua Wan, Peng Wang, Yazhe Zhai, Yu Xie, Yifei He, Ye Wu

Physics in Medicine and Biology, 2026

Journal

Childhood chronic stress associated with abnormal brain white matter networks in first-episode, drug-naïve

Zhujun Wang, Zhaoxian Ming, Meijiang Jin, Maojia Ran, Hang Zhang, Yuanmei Tao, Hanmei Xu, Shoukang Zou, Ye Wu, Li Yin

Frontiers in Psychiatry, 2026

Journal

DDTracking: A Diffusion Model-Based Deep Generative Framework with Local-Global Spatiotemporal Modeling for Diffusion MRI Tractography

Yijie Li, Wei Zhang, Xi Zhu, Ye Wu, Yogesh Rathi, Lauren J O’Donnell, Fan Zhang

Medical Image Analysis, 2026

Journal

Impairment of brain short association fibers across clinical stages in amyotrophic lateral sclerosis: a new biomarker mirroring disease progression

Nao-Xin Huang, Zi-Wei Cai, Shao-Peng Zhuang, Hong-Yu Lin, Sheng Chen, Zhang-Yu Zou, Ye Wu, Hua-Jun Chen

BMC Medicine, 2026

Journal

Deep Learning Empowered Microstructure Codebook: New Paradigm for Multi-Parameter Tissue Characterization Estimation

Tenglong Wang, Zhonghua Wan, Shuxin Cao, Jiahao Yu, Yifei He, Yu Xie, Fan Zhang, Ye Wu

Human Brain Mapping, 2026

2025

Journal

Edge-aware feature aggregation network for polyp segmentation

Tao Zhou, Yizhe Zhang, Geng Chen, Yi Zhou, Ye Wu, Deng-Ping Fan

Machine Intelligence Research, 2025

Journal

A survey on deep learning for polyp segmentation: Techniques, challenges and future trends

Jiaxin Mei, Tao Zhou, Kaiwen Huang, Yizhe Zhang, Yi Zhou, Ye Wu, Huazhu Fu

Visual Intelligence, 2025

Journal

DDEvENet: Evidence-based ensemble learning for uncertainty-aware brain parcellation using diffusion MRI

Chenjun Li, Dian Yang, Shun Yao, Shuyue Wang, Ye Wu, Le Zhang, Qiannuo Li, Kang Ik Kevin Cho, Johanna Seitz-Holland, Lipeng Ning, others

Computerized Medical Imaging and Graphics, 2025

Journal

WeakPolyp-SAM: Segment Anything Model-driven weakly-supervised polyp segmentation

Yiming Zhao, Tao Zhou, Yunqi Gu, Yi Zhou, Yizhe Zhang, Ye Wu, Huazhu Fu

Knowledge-Based Systems, 2025

Journal

Revealing excitation-inhibition imbalance in Alzheimer’s disease using multiscale neural model inversion of resting-state functional MRI

Guoshi Li, Li-Ming Hsu, Ye Wu, Andrea C Bozoki, Yen-Yu Ian Shih, Pew-Thian Yap

Communications Medicine, 2025

Journal

Soma and neurite density imaging detects brain microstructural impairments in amyotrophic lateral sclerosis

Jing-Yi Zeng, Hui-Wei Huang, Shao-Peng Zhuang, Ye Wu, Sheng Chen, Zhang-Yu Zou, Hua-Jun Chen

European Journal of Radiology, 2025

Journal

Deep learning-based diffusion MRI tractography: Integrating spatial and anatomical information

Yiqiong Yang, Yitian Yuan, Baoxing Ren, Ye Wu, Yanqiu Feng, Xinyuan Zhang

NeuroImage, 2025

Conference

A Novel Streamline-Based Diffusion MRI Tractography Registration Method with Probabilistic Keypoint Detection

Junyi Wang, Mubai Du, Ye Wu, Yijie Li, William M Wells III, Lauren J O’Donnell, Fan Zhang

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2025

Journal

Differential patterns of axonal loss associated with threat-related adversity in atypical depression and non-atypical depression

Huifeng Zhang, Lei Ding, Lanxiang He, Rubai Zhou, Wenxian Lu, Tenghuan Xu, Ye Wu, Daihui Peng

NeuroImage: Clinical, 2025

Journal

Association of aberrant gray matter neurite density with neurovegetative symptom in atypical depression

Huifeng Zhang, Rubai Zhou, Wenxian Lu, Yousong Su, Yiyun Cai, Jia Huang, Shen He, Lei Ding, Yun Wang, Min Zhang, others

Journal of Affective Disorders, 2025

Journal

A novel baseline perspective visibility graph for time series analysis

Huang-Jing Ni, Zi-Jie Song, Jiao-Long Qin, Ye Wu, Shi-Le Qi, Ming Song

Chinese Physics B, 2025

Conference

Exploring Consistency of Connectome Across Species Using Inter-Bundle Topological Graph Network (ibTGN)

Yazhe Zhai, Yu Xie, Yifei He, Jiaolong Qin, Ye Wu, others

2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI), 2025

Conference

Unsupervised Normative Learning for Quality Assessment on Diffusion MRI

Jiahao Yu, Tenglong Wang, Yifei He, Yiang Pan, Jianzhong He, Ye Wu

2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI), 2025

Journal

Toward diffusion MRI in the diagnosis and treatment of pancreatic cancer

Junhao Lee, Tingting Lin, Yifei He, Ye Wu, Jiaolong Qin

Medical Oncology, 2025

Journal

Recent advances in pediatric neuroradiology

Sahar Ahmad, Yunzhi Huang, Ye Wu

Frontiers in Radiology, 2025

Journal

Unified Framework for Oculomotor Nerve Reconstruction: Tractography-Based Anatomical Assessment

Jiahao Huang, Qingrun Zeng, Ye Wu, Jiawei Zhang, Mengjun Li, Lei Xie, Mingchu Li, Yuanjing Feng

Journal of Neuroimaging, 2025

Journal

A new gradient-based method for analyzing brain white matter fiber geometry

Jiaolong Qin, Weihong Dong, Huangjing Ni, Ye Wu, Haiyan Liu, Zhijian Yao, Qing Lu

Journal of Neuroscience Methods, 2025

Journal

Developing Brain

Ye Wu, Lanxiang He, Xinyuan Zhang, Fan Zhang

Neuroimaging-From Research to Clinical Practice: From Research to Clinical Practice, 2025

Journal

DDTracking: A Deep Generative Framework for Diffusion MRI Tractography with Streamline Local-Global Spatiotemporal Modeling

Yijie Li, Wei Zhang, Xi Zhu, Ye Wu, Yogesh Rathi, Lauren J O'Donnell, Fan Zhang

arXiv preprint arXiv:2508.04568, 2025

Journal

弥散磁共振纤维束成像分割算法综述.

张蔚, 李轶杰, 吴烨, 陈华富, 张帆

Journal of Data Acquisition & Processing/Shu Ju Cai Ji Yu Chu Li, 2025

Conference

A Novel Path Signature-Based Metric for Quantifying Morphological Characteristics of White Matter Fibers

Jiaolong Qin, D Dong, Huangjing Ni, Zhijian Yao, Qing Lu, Ye Wu

International Society for Magnetic Resonance in Medicine, 2025

Conference

Path Signature Features Revealed SSRI-Induced White Matter Morphological Reorganization in Depressions

Jiaolong Qin, Weihong Dong, Huangjing Ni, Zhijian Yao, Qing Lu, Ye Wu

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2025

Conference

A Novel Deep Learning Approach for Tissue Microstructure Estimation Using Spherical Mean Technique

Yiang Pan, Yuanjing Feng, Jianzhong He, Jianan Cui, Lei Xie, Zan Chen, Qingrun Zeng, Jiawei Zhang, Yan Yu, Konstantin K Kukanov, others

2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI), 2025

Journal

A novel baseline perspective visibility graph for time series analysis

Huang-Jing Ni, Zi-Jie Song, Jiao-Long Qin, Ye Wu, Shi-Le Qi, Ming Song

Chinese Physics B, 2025

Journal

Heterogeneity in brain morphology and psychological, cognitive, and contextual factors of gender identity

Hiuying Yip, Yifei He, Yoonmi Hong, Jiaolong Qin, Fan Zhang, Ye Wu

Brain-X, 2025

Journal

A relaxation-diffusion MRI dataset of aging mouse brains at 9.4 Tesla

Baoxing Ren, Ye Wu, Yan Liu, Yongpeng Bai, Quan Tao, Yanqiu Feng, Xinyuan Zhang

Scientific Data, 2025

Journal

Early Identification of Subjective Cognitive Decline Using 2D Horizontal Visibility Graph Analysis of Structural MRI Networks

Ni Huang-Jing, Dai Yu-Fei, Wu Ye, Qin Jiao-Long

Chinese Physics B, 2025

Conference

Cross-Species Cortical Parcellation via Homology Consensus Graph Representation Learning from Diffusion MRI Tractography

Yazhe Zhai, Yifei He, Zhonghua Wan, Yu Xie, Jiaolong Qin, Ye Wu

2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2025

Journal

Dual-Branch Deep Unfolding Network for Compressed Sensing MRI Reconstruction

Yujie Liu, Yu Luo, Jie Ling, Lieqing Lin, Ye Wu, Shun Yao

IEEE Journal of Biomedical and Health Informatics, 2025

Journal

Structural network communication differences in drug-naive depressed adolescents with non-suicidal self-injury and suicide attempts

Shuai Wang, Jiao-Long Qin, Lian-Lian Yang, Ying-Ying Ji, Hai-Xia Huang, Xiao-Shan Gao, Zi-Mo Zhou, Zhen-Ru Guo, Ye Wu, Lin Tian, others

World Journal of Psychiatry, 2025

Journal

White Matter Stratification in Depression Predicts Multidimensional Antidepressant Responses

Jiaolong Qin, Xinyi Wang, Huangjing Ni, Ye Wu, Haiyan Liu, Lingling Hua, Rui Yan, Hao Tang, Peng Zhao, Zhijian Yao, others

medRxiv, 2025

Conference

Streamline Signature Net (SSN): Efficient White Matter Pathway Recognition for Bundles Parcellation Using Path Signature

Renzhi Zhao, Xin Zhang, Zihao Tan, Jiakun Xu, Zhenyu Yang, Ye Wu, Xiangmin Xu

International Workshop on Computational Diffusion MRI, 2025

Conference

Consensus Graph Representation Learning for Subcortical Parcellation on Diffusion MRI

Zhonghua Wan, Peng Wang, Yazhe Zhai, Yifei He, Yu Xie, Jiaolong Qin, Ye Wu

2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2025

Conference

Revitalizing Quantitative Imaging with a High-Quality Microstructural Codebook on Diffusion MRI

Tenglong Wang, Jiahao Yu, Xiaoming Liu, Shuxin Cao, Yuanjing Feng, Ye Wu

2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2025

2024

Journal

Distance-specific functional connectivity strength alterations in human immunodeficiency virus asymptomatic neurocognitive impairment patients: a cross-sectional study

Jing Zhao, Ye Wu, Feng Chen, Haiyan Zhao, Jian Chen, Bin Jing, Hongjun Li

Quantitative Imaging in Medicine and Surgery, 2024

Journal

An open relaxation-diffusion MRI dataset in neurosurgical studies

Ye Wu, Xiaoming Liu, Yunzhi Huang, Tao Zhou, Fan Zhang

Scientific Data, 2024

Journal

Neurite orientation dispersion and density imaging quantifies microstructural impairment in the thalamus and its connectivity in amyotrophic lateral sclerosis

Yun-Bin Cao, Ye Wu, Qiu-Yi Dong, Nao-Xin Huang, Zhang-Yu Zou, Hua-Jun Chen

CNS Neuroscience & Therapeutics, 2024

Journal

TestFit: A plug-and-play one-pass test time method for medical image segmentation

Yizhe Zhang, Tao Zhou, Yuhui Tao, Shuo Wang, Ye Wu, Benyuan Liu, Pengfei Gu, Qiang Chen, Danny Z Chen

Medical Image Analysis, 2024

Conference

SMNet: A Spherical Mean Network for Probing Tissue Microarchitecture from Single-shell dMRI

Ye Wu, Yue Ding, Xiaoming Liu, Jiaolong Qin, Yizhe Zhang, Yoonmi Hong, Tao Zhou

IEEE International Symposium on Biomedical Imaging, 2024

Conference

Exploring the Potential Applications of Relaxation-Diffusion Spectrum Imaging in Neurosurgical Studies

Ye Wu, Xiaoming Liu, Peng Sun, Yizhe Zhang, Jiaolong Qin, Tao Zhou

Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM), 2024

Conference

Structural Connectivity Network in Human Brain Concerning Transgenderism

Ye Wu, Yifei He, Tao Zhou, Xiaoming Liu

Annual Meeting of the Organization for Human Brain Mapping, 2024

Conference

Transduction Enhanced Inductive Inference for Imbalanced Classification in Medical Images

Yizhe Zhang, Tao Zhou, Ye Wu, Shuo Wang, Danny Chen

IEEE International Symposium on Biomedical Imaging, 2024

Journal

A multimodal submillimeter MRI atlas of the human cerebellum

Wenjiao Lyu, Ye Wu, Khoi Minh Huynh, Sahar Ahmad, Pew-Thian Yap

Scientific reports, 2024

Journal

Optimal shrinkage denoising breaks the noise floor in high-resolution diffusion MRI

Khoi Huynh, Wei-Tang Chang, Ye Wu, Pew-Thian Yap

Patterns, 2024

Journal

A diffusion MRI tractography atlas for concurrent white matter mapping across Eastern and Western populations

Yijie Li, Wei Zhang, Ye Wu, Li Yin, Ce Zhu, Yuqian Chen, Suheyla Cetin-Karayumak, Kang Ik K Cho, Leo R Zekelman, Jarrett Rushmore, others

Scientific Data, 2024

Journal

Simulation-based inference of developmental EEG maturation with the spectral graph model

Danilo Bernardo, Xihe Xie, Parul Verma, Jonathan Kim, Virginia Liu, Adam L Numis, Ye Wu, Hannah C Glass, Pew-Thian Yap, Srikantan S Nagarajan, others

Communications Physics, 2024

Journal

Cross-contrast mutual fusion network for joint MRI reconstruction and super-resolution

Yue Ding, Tao Zhou, Lei Xiang, Ye Wu

Pattern Recognition, 2024

Journal

Voxelwise analysis of the central hearing pathway in senior dogs reveals changes associated with fractional lifespan

Chin-Chieh Yang, Pew-Thian Yap, Ye Wu, Natalia Zidan, Gilad Fefer, Nathan C Nelson, Margaret E Gruen, Natasha J Olby

Scientific Reports, 2024

Journal

Domain-interactive contrastive learning and prototype-guided self-training for cross-domain polyp segmentation

Ziru Lu, Yizhe Zhang, Yi Zhou, Ye Wu, Tao Zhou

IEEE Transactions on Medical Imaging, 2024

Journal

Spatially robust adaptive ensemble average propagator reconstruction via spherical polar Fourier imaging

Xifeng Wang, Shangbang Rao, Jian Cheng, Ye Wu, Pew-Thian Yap, Joseph Ibrahim, Hongtu Zhu

Statistics and Its Interface, 2024

Conference

Exploring the Potential Applications of Relaxation-Diffusion Spectrum Imaging in Neurosurgical Studies

Ye Wu, Xiaoming Liu, Peng Sun, Yizhe Zhang, Jiaolong Qin, Tao Zhou

Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM), 2024

Conference

Demonstration of TE-dependence of lateralization of structural connectomes

Yifei He, Xiaoming Liu, Peng Sun, Tenglong Wang, Yizhe Zhang, Jiaolong Qin, Tao Zhou, Ye Wu

Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM), 2024

Conference

Demonstration of TE-dependence of tissue microstructure estimation

Tenglong Wang, Yifei He, Xiaoming Liu, Peng Sun, Yizhe Zhang, Jiaolong Qin, Jiahao Yu, Tao Zhou, Ye Wu

Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM), 2024

Conference

Vertical Orbitofrontal Fascicles in the Brain: A Preliminary Confirmation via Diffusion Tractography

Ye Wu, Yifei He, Tao Zhou, Xiaoming Liu

30th Annual Meeting of the Organization for Human Brain Mapping, 2024

Conference

Structural Connectivity Network in Human Brain Concerning Transgenderism

Ye Wu, Yifei He, Tao Zhou, Xiaoming Liu

30th Annual Meeting of the Organization for Human Brain Mapping, 2024

Journal

弥散磁共振成像在中医诊疗中的机遇与挑战.

吴烨, 和岚翔, 张鑫媛, 伏云鹤, 刘小明, 何建忠

Journal of Data Acquisition & Processing/Shu Ju Cai Ji Yu Chu Li, 2024

Journal

MICCAI-CDMRI 2023 QuantConn challenge findings on achieving robust quantitative connectivity through harmonized preprocessing of diffusion MRI

Nancy R Newlin, Kurt Schilling, Serge Koudoro, Bramsh Qamar Chandio, Praitayini Kanakaraj, Daniel Moyer, Claire E Kelly, Sila Genc, Jian Chen, Joseph Yuan-Mou Yang, others

ArXiv, 2024

Journal

Data tells the truth: a knowledge distillation method for genomic survival analysis by handling censoring

Xiu-Shen Wei, He-Yang Xu, Ye Wu, Xiaoming Liu, Ruru Gao, Jiacheng Liu, Bowen Du

Fundamental Research, 2024

Journal

Spherical harmonics-based deep learning achieves generalized and accurate diffusion tensor imaging

Yunwei Chen, Jialong Li, Qiqi Lu, Ye Wu, Xiaoming Liu, Yuanyuan Gao, Yanqiu Feng, Zhicheng Zhang, Xinyuan Zhang

IEEE Journal of Biomedical and Health Informatics, 2024

Journal

Reliable Deep Diffusion Tensor Estimation: Rethinking the Power of Data-Driven Optimization Routine

Jialong Li, Zhicheng Zhang, Yunwei Chen, Qiqi Lu, Ye Wu, Xiaoming Liu, QianJin Feng, Yanqiu Feng, Xinyuan Zhang

arXiv preprint arXiv:2409.02492, 2024

Conference

Textpolyp: Point-supervised polyp segmentation with text cues

Yiming Zhao, Yi Zhou, Yizhe Zhang, Ye Wu, Tao Zhou

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2024

Conference

Advanced Diffusion MRI in Developing Brain

Ye Wu, Lanxiang He, Xinyuan Zhang, Fan Zhang

Neuroimaging-From Research to Clinical Practice, 2024

Journal

Spherical-deconvolution informed filtering of tractograms changes laterality of structural connectome

Yifei He, Yoonmi Hong, Ye Wu

NeuroImage, 2024

Conference

Neuroscience for Neurosurgeons

Farhana Akter, Nigel Emptage, Florian Engert, Mitchel S Berger

Cambridge University Press, 2024

Conference

Combining Segment Anything Model with Domain-Specific Knowledge for Semi-Supervised Learning in Medical Image Segmentation

Yizhe Zhang, Tao Zhou, Ye Wu, Pengfei Gu, Shuo Wang

Chinese Conference on Pattern Recognition and Computer Vision (PRCV), 2024

Conference

FibGrid: Characterizing Anatomical Pathways in Hypergrid for Direct Tract Segmentation

Yu Xie, Yazhe Zhai, Yifei He, Jiahao Yu, Jiaolong Qin, Ye Wu

2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2024

Conference

Jointly Estimation of Microstructure Maps Across Acquisition Protocols

Tenglong Wang, Jiahao Yu, Yiang Pan, Jianzhong He, Yifei He, Ye Wu

2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2024

Conference

Introducing QuantConn: Overcoming Challenging Diffusion Acquisitions with Harmonization

Nancy Newlin, Kurt Schilling, Serge Koudoro, Bramsh Qamar Chandio, Praitayini Kanakaraj, Daniel Moyer, Claire E Kelly, Sila Genc, Joseph Yuan-Mou Yang, Ye Wu, others

International Workshop on Computational Diffusion MRI, 2024

Journal

Opportunities and challenges of diffusion MRI in traditional Chinese medicine

WU Ye, HE Lanxiang, ZHANG Xinyuan, others

Journal of Data Acquisition and Processing, 2024

2023

Journal

Multifaceted atlases of the human brain in its infancy

Sahar Ahmad, Ye Wu, Zhengwang Wu, Kim-Han Thung, Siyuan Liu, Weili Lin, Gang Li, Li Wang, Pew-Thian Yap

Nature Methods, 2023

Journal

Aberrant dynamic functional network connectivity in type 2 diabetes mellitus individuals

Wenjiao Lyu, Ye Wu, Haoming Huang, Yuna Chen, Xin Tan, Yi Liang, Xiaomeng Ma, Yue Feng, Jinjian Wu, Shangyu Kang, others

Cognitive Neurodynamics, 2023

Journal

The art, science, and secrets of scanning young children

Marisa N Spann, Jessica L Wisnowski, Banu Ahtam, Wei Gao, Hao Huang, Mary Beth Nebel, Elizabeth S Norton, Minhui Ouyang, Vidya Rajagopalan, Tracy Riggins, others

Biological Psychiatry, 2023

Journal

Brain tissue segmentation across the human lifespan via supervised contrastive learning

Xiaoyang Chen, Jinjian Wu, Wenjiao Lyu, Yicheng Zou, Kim-Han Thung, Siyuan Liu, Ye Wu, Sahar Ahmad, Pew-Thian Yap

arXiv preprint arXiv:2301.01369, 2023

Journal

Can sam segment polyps?

Tao Zhou, Yizhe Zhang, Yi Zhou, Ye Wu, Chen Gong

arXiv preprint arXiv:2304.07583, 2023

Journal

Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge

Gabriel Girard, Rafael-Patiño

NeuroImage, 2023

Journal

White matter microstructural disruption in minimal hepatic encephalopathy: a neurite orientation dispersion and density imaging (NODDI) study

Qiu-Yi Dong, Jia-Hui Lin, Ye Wu, Yun-Bin Cao, Min-Xiong Zhou, Hua-Jun Chen

Neuroradiology, 2023

Journal

Altered isotropic volume fraction in gray matter after sleep deprivation and its association with visuospatial memory: A neurite orientation dispersion and density imaging study

Jia-Hui Lin, Xu-Hui Chen, Ye Wu, Yun-Bin Cao, Hua-Jun Chen, Nao-Xin Huang

Frontiers in Neuroscience, 2023

Conference

Cross-contrast fusion and aggregation network for multi-contrast MRI super-resolution

Yue Ding, Tao Zhou, Ye Wu

Proceedings of the 2023 9th International Conference on Computing and Artificial Intelligence, 2023

Journal

Alterations of peripheral cytokines, BDNF, and surface-based morphometry indices in T2DM patients without cognitive impairment

Wenjiao Lyu, Yuna Chen, Kui Zhao, Xin Tan, Ye Wu, Shijun Qiu

Frontiers in Neuroscience, 2023

Journal

Graph analysis of diffusion tensor imaging-based connectome in young men with internet gaming disorder

Jiaolong Qin, Shuai Wang, Huangjing Ni, Ye Wu, Limin Chen, Shuaiyi Guo, Fuquan Zhang, Zhenhe Zhou, Lin Tian

Frontiers in Neuroscience, 2023

Journal

Probing bundle-wise abnormalities in patients infected with human immunodeficiency virus using fixel-based analysis: new insights into neurocognitive impairments

Jing Zhao, Bin Jing, Jiaojiao Liu, Feng Chen, Ye Wu, Hongjun Li

Chinese Medical Journal, 2023

Journal

Samdsk: Combining segment anything model with domain-specific knowledge for semi-supervised learning in medical image segmentation

Yizhe Zhang, Tao Zhou, Shuo Wang, Ye Wu, Pengfei Gu, Danny Z Chen

arXiv preprint arXiv:2308.13759, 2023

Conference

Relaxation-diffusion spectrum imaging for probing tissue microarchitecture

Ye Wu, Xiaoming Liu, Xinyuan Zhang, Khoi Minh Huynh, Sahar Ahmad, Pew-Thian Yap

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2023

Conference

Microstructure fingerprinting for heterogeneously oriented tissue microenvironments

Khoi Minh Huynh, Ye Wu, Sahar Ahmad, Pew-Thian Yap

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2023

Conference

Hawkeye: A PyTorch-based Library for Fine-Grained Image Recognition with Deep Learning

Jiabei He, Yang Shen, Xiu-Shen Wei, Ye Wu

Proceedings of the 31st ACM International Conference on Multimedia, 2023

Journal

Alterations via inter-regional connective relationships in Alzheimer’s disease

Xiaomei Ren, Bowen Dong, Ying Luan, Ye Wu, Yunzhi Huang, Alzheimer's Disease Neuroimaging Initiative

Frontiers in Human Neuroscience, 2023

Journal

Segment anything model-guided collaborative learning network for scribble-supervised polyp segmentation

Yiming Zhao, Tao Zhou, Yunqi Gu, Yi Zhou, Yizhe Zhang, Ye Wu, Huazhu Fu

arXiv preprint arXiv:2312.00312, 2023

Journal

Corrigendum: Alterations via inter-regional connective relationships in Alzheimer's disease

Xiaomei Ren, Bowen Dong, Ying Luan, Ye Wu, Yunzhi Huang, Alzheimer's Disease Neuroimaging Initiative

Frontiers in Human Neuroscience, 2023

2022

Journal

Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI

Chiara Maffei, Gabriel Girard, Kurt G Schilling, Dogu Baran Aydogan, Nagesh Adluru, Andrey Zhylka, Ye Wu, Matteo Mancini, Andac Hamamci, Alessia Sarica, others

NeuroImage, 2022

Journal

Rapid diffusion magnetic resonance imaging using slice-interleaved encoding

Tiantian Xu, Ye Wu, Yoonmi Hong, Sahar Ahmad, Khoi Minh Huynh, Zhixing Wang, Weili Lin, Wei-Tang Chang, Pew-Thian Yap

Medical image analysis, 2022

Conference

Harmonization of Multi-site Cortical Data Across the Human Lifespan

Sahar Ahmad, Fang Nan, Ye Wu, Zhengwang Wu, Weili Lin, Li Wang, Gang Li, Di Wu, Pew-Thian Yap

International Workshop on Machine Learning in Medical Imaging, 2022

Journal

Excitation-inhibition imbalance in Alzheimer’s disease using multiscale neural model inversion of resting-state fMRI

Guoshi Li, Li-Ming Hsu, Ye Wu, Andrea C Bozoki, Yen-Yu Ian Shih, Pew-Thian Yap

medRxiv, 2022

Journal

Biomedical image analysis competitions: The state of current participation practice

Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J Adler, Patrick Godau, Veronika Cheplygina, Michal Kozubek, Sharib Ali, others

arXiv preprint arXiv:2212.08568, 2022

Conference

Intravoxel Architecture Atlases (IAA) Across the Human Lifespan

Ye Wu, Sahar Ahmad, Pew-Thian Yap

Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM), 2022

Journal

Computational Diffusion MRI: 13th International Workshop, CDMRI 2022, Held in Conjunction with MICCAI 2022, Singapore, Singapore, September 22, 2022, Proceedings

Suheyla Cetin-Karayumak, Daan Christiaens, Matteo Figini, Pamela Guevara, Tomasz Pieciak, Elizabeth Powell, Francois Rheault

Springer Nature, 2022

Conference

Subcortical Parcellation of the Human Brain via Automated Voxel Annotation with Fiber Clusters

Ye Wu, Sahar Ahmad, Pew-Thian Yap

Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM), 2022

Conference

Harmonization of Cortical Thickness Measurements Throughout the Human Lifespan

Sahar Ahmad, Fang Nan, Ye Wu, Zhengwang Wu, Weili Lin, Li Wang, Gang Li, Di Wu, Pew-Thian Yap

Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM), 2022

Conference

Cortical Hierarchy in the Infant Brain Revealed by a Large-scale Neural Circuit Model

Guoshi Li, Hoyt Taylor, Ye Wu, Sahar Ahmad, Kimhan Thung, Zhengwang Wu, Gang Li, Li Wang, Pew-Thian Lin, Weili, Yap

28th Annual Meeting of the Organization for Human Brain Mapping, 2022

Conference

MRI Brain Tissue Segmentation Across the Human Lifespan

Xiaoyang Chen, Sahar Ahmad, Yicheng Zou, Jinjian Wu, Wenjiao Lyu, Ye Wu, Yap Pew-Thian

28th Annual Meeting of the Organization for Human Brain Mapping, 2022

Conference

Whole Brain Parcellation Over the Human Lifespan

Ye Wu, Sahar Ahmad, Wenjiao Lyu, Yap Pew-Thian

28th Annual Meeting of the Organization for Human Brain Mapping, 2022

Conference

Growth Charts for Regional Cortical Thickness Across the Human Lifespan

Sahar Ahmad, Ye Wu, Zhengwang Wu, Weili Lin, Li Wang, Gang Li, Pew-Thian Yap

28th Annual Meeting of the Organization for Human Brain Mapping, 2022

Conference

Superficial White Matter Tract Atlases Across the Human Lifespan

Ye Wu, Sahar Ahmad, Wenjiao Lyu, Yap Pew-Thian

28th Annual Meeting of the Organization for Human Brain Mapping, 2022

2021

Journal

Multiscale neural modeling of resting-state fMRI reveals executive-limbic malfunction as a core mechanism in major depressive disorder

Guoshi Li, Yujie Liu, Yanting Zheng, Ye Wu, Danian Li, Xinyu Liang, Yaoping Chen, Ying Cui, Pew-Thian Yap, Shijun Qiu, others

NeuroImage: Clinical, 2021

Journal

Prediction of 7-year's conversion from subjective cognitive decline to mild cognitive impairment

Ling Yue, Dan Hu, Han Zhang, Junhao Wen, Ye Wu, Wei Li, Lin Sun, Xia Li, Jinghua Wang, Guanjun Li, others

Human Brain Mapping, 2021

Conference

White Matter Tract Atlases of the Baby Brain

Ye Wu, Yoonmi Hong, Sahar Ahmad, Weili Lin, Pew-Thian Yap

27th Annual Meeting of the Organization for Human Brain Mapping, 2021

Conference

White matter tract atlases of a century of human life

Ye Wu, Sahar Ahmad, Weili Lin, Pew-Thian Yap

OHBM. Virtual Meeting, 2021

Conference

Active cortex tractography

Ye Wu, Yoonmi Hong, Sahar Ahmad, Pew-Thian Yap

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2021

Conference

Highly reproducible whole brain parcellation in individuals via voxel annotation with fiber clusters

Ye Wu, Sahar Ahmad, Pew-Thian Yap

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2021

Conference

Surface-Guided Image Fusion for Preserving Cortical Details in Human Brain Templates

Sahar Ahmad, Ye Wu, Pew-Thian Yap

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2021

Conference

Deep simulation of facial appearance changes following craniomaxillofacial bony movements in orthognathic surgical planning

Lei Ma, Daeseung Kim, Chunfeng Lian, Deqiang Xiao, Tianshu Kuang, Qin Liu, Yankun Lang, Hannah H Deng, Jaime Gateno, Ye Wu, others

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2021

Conference

An Automated Processing Pipeline for Diffusion MRI in the Baby Connectome Project

Ye Wu, Sahar Ahmad, Khoi Minh-Huynh, Siyuan Liu, Kim-Han Thung, Weili Lin, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2021

Conference

Quantifying Cell Size and Membrane Permeability with Microstructure Fingerprinting

Khoi Minh-Huynh, Ye Wu, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2021

Conference

Subsampling Diffusion Gradients via Poisson Sphere Elimination

Ye Wu, Sahar Ahmad, Lei Ma, Erkun Yang, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM) Annual Meeting, 2021

Conference

New insights from the IronTract challenge: Simple post-processing enhances the accuracy of diffusion tractography

Chiara Maffei, Gabriel Girard, Kurt G Schilling, Dogu Baran Aydogan, Nagesh Adluru, Andrey Zhylka, Ye Wu, Matteo Mancini, Andac Hamamci, Alessia Sarica, others

2021 ISMRM & SMRT Annual Meeting & Exhibition, 2021

Conference

Image Reconstruction from Accelerated Slice-Interleaved Diffusion Encoding Data

Tiantian Xu, Ye Wu, Yoonmi Hong, Khoi Minh Huynh, Weili Lin, Wei-Tang Chang, Pew-Thian Yap

Computational Diffusion MRI: International MICCAI Workshop, Lima, Peru, October 2020, 2021

Conference

Vox2Surf: Implicit surface reconstruction from volumetric data

Yoonmi Hong, Sahar Ahmad, Ye Wu, Siyuan Liu, Pew-Thian Yap

International Workshop on Machine Learning in Medical Imaging, 2021

Conference

Longitudinal Parcellation of the Infant Cortex Using Multi-modal Connectome Harmonics

Hoyt Patrick Taylor, Sahar Ahmad, Ye Wu, Khoi Minh Huynh, Zhen Zhou, Zhengwang Wu, Weili Lin, Li Wang, Gang Li, Han Zhang, others

Computational Diffusion MRI: International MICCAI Workshop, Lima, Peru, October 2020, 2021

Conference

Human Brain Surface-Volume Atlases of Newborns to Centenarians

Sahar Ahmad, Ye Wu, Zhengwang Wu, Weili Lin, Li Wang, Gang Li, Pew-Thian Yap

The 27th Annual Meeting and Educational Courses of OHBM, 2021

Conference

Correction to: Highly Reproducible Whole Brain Parcellation in Individuals via Voxel Annotation with Fiber Clusters

Ye Wu, Sahar Ahmad, Pew-Thian Yap

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2021

Conference

COMEDI: A Toolkit for Lifespan Computational Diffusion MRI

Ye Wu, Sahar Ahmad, Khoi Minh Huynh, Tiantian Xu, Pew-Thian Yap

Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM), 2021

Journal

Building Resilience to Natural Hazards in the Context of Climate Change

G'e Hutter

Springer Fachmedien Wiesbaden, 2021

Journal

Aberrantly high activation of a FoxM1--STMN1 axis contributes to progression and tumorigenesis in FoxM1-driven cancers

Jun Liu, Jipeng Li, Ke Wang, Haiming Liu, Jianyong Sun, Xinhui Zhao, Yanping Yu, Yihuan Qiao, Ye Wu, Xiaofang Zhang, others

Signal transduction and targeted therapy, 2021

2020

Journal

Tractography reproducibility challenge with empirical data (TraCED): the 2017 ISMRM diffusion study group challenge

Vishwesh Nath, Kurt G Schilling, Prasanna Parvathaneni, Yuankai Huo, Justin A Blaber, Allison E Hainline, Muhamed Barakovic, David Romascano, Jonathan Rafael-Patino, Matteo Frigo, others

Journal of Magnetic Resonance Imaging, 2020

Journal

Mitigating gyral bias in cortical tractography via asymmetric fiber orientation distributions

Ye Wu, Yoonmi Hong, Yuanjing Feng, Dinggang Shen, Pew-Thian Yap

Medical image analysis, 2020

Journal

Probing tissue microarchitecture of the baby brain via spherical mean spectrum imaging

Khoi Minh Huynh, Tiantian Xu, Ye Wu, Xifeng Wang, Geng Chen, Haiyong Wu, Kim-Han Thung, Weili Lin, Dinggang Shen, Pew-Thian Yap

IEEE Transactions on Medical Imaging, 2020

Journal

Multifold acceleration of diffusion MRI via slice-interleaved diffusion encoding (SIDE)

Yoonmi Hong, Wei-Tang Chang, Geng Chen, Ye Wu, Weili Lin, Dinggang Shen, Pew-Thian Yap

arXiv preprint arXiv:2002.10908, 2020

Journal

The concurrent disturbance of dynamic functional and structural brain connectome in major depressive disorder: the prefronto-insular pathway

Huifeng Zhang, Lena Palaniyappan, Yan Wu, Enchao Cong, Chuangxin Wu, Lei Ding, Feng Jin, Meihui Qiu, Yueqi Huang, Ye Wu, others

Journal of affective disorders, 2020

Conference

Characterizing intra-soma diffusion with spherical mean spectrum imaging

Khoi Minh Huynh, Ye Wu, Kim-Han Thung, Sahar Ahmad, Hoyt Patrick Taylor IV, Dinggang Shen, Pew-Thian Yap

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2020

Conference

Tract dictionary learning for fast and robust recognition of fiber bundles

Ye Wu, Yoonmi Hong, Sahar Ahmad, Weili Lin, Dinggang Shen, Pew-Thian Yap, UNC/UMN Baby Connectome Project Consortium

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2020

Conference

Globally optimized super-resolution of diffusion mri data via fiber continuity

Ye Wu, Yoonmi Hong, Sahar Ahmad, Wei-Tang Chang, Weili Lin, Dinggang Shen, Pew-Thian Yap

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2020

Conference

Fast correction of eddy-current and susceptibility-induced distortions using rotation-invariant contrasts

Sahar Ahmad, Ye Wu, Khoi Minh Huynh, Kim-Han Thung, Weili Lin, Dinggang Shen, Pew-Thian Yap, UNC/UMN Baby Connectome Project Consortium

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2020

Conference

The IronTract challenge: validation and optimal tractography methods for the HCP diffusion acquisition scheme

Chiara Maffei, Gabriel Girard, Kurt G Schilling, Nagesh Adluru, Dogu Baran Aydogan, Andac Hamamci, Fang-Cheng Yeh, Matteo Mancini, Ye Wu, Alessia Sarica, others

Proc. Intl. Soc. Mag. Res. Med, 2020

Journal

Elevated neurofilament light chain in plasma is associated with reduced right hippocampal and amygdala volume in Alzheimer's patients

Wei Li, Ling Yue, Ye Wu, Lin Sun, Shifu Xiao

, 2020

Conference

Disrupted dynamic functional and structural brain connectome in major depression: The prefronto-insular pathway

Huifeng Zhang, Lena Palaniyappan, Chuangxin Wu, Lei Ding, Feng Jin, Meihui Qiu, Yueqi Huang, Ye Wu, Jinhong Wang, Shihui Ying, others

BIPOLAR DISORDERS, 2020

Conference

Mitigating Gyral Bias via Active Cortex Tractography

Ye Wu, Yoonmi Hong, Pew-Thian Yap

Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM), 2020

2019

Journal

A ReliefF-SVM-based method for marking dopamine-based disease characteristics: A study on SWEDD and Parkinson’s disease

Liling Jin, Qingrun Zeng, Jianzhong He, Yuanjing Feng, Siqi Zhou, Ye Wu

Behavioural brain research, 2019

Journal

Multi-site harmonization of diffusion MRI data via method of moments

Khoi Minh Huynh, Geng Chen, Ye Wu, Dinggang Shen, Pew-Thian Yap

IEEE transactions on medical imaging, 2019

Conference

Biases of Microstructure Models in Baby Diffusion MRI

Khoi Minh Huynh, Ye Wu, Kim-Han Thung, Geng Chen, Weili Lin, Dinggang Shen, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM), 2019

Conference

Improving Tractography in Baby Diffusion MRI via Asymmetric Spectrum Imaging

Ye Wu, Weili Lin, Dinggang Shen, Pew-Thian Yap

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM), 2019

Conference

The Effects of Fiber Response Functions on Orientation Estimation in Baby Diffusion MRI

Ye Wu, Weili Lin, Dinggang Shen, Pew-Thian Yap

OHBM, Rome, Italy, June 9-13, 2019, 2019

Conference

Prediction of 7-year progression from subjective cognitive decline to MCI

Ling Yue, Dan Hu, Han Zhang, Junhao Wen, Ye Wu, Tao Wang, Dinggang Shen, Shifu Xiao

OHBM, Rome, Italy, June 9-13, 2019, 2019

Journal

Test--retest reproducibility of white matter parcellation using diffusion MRI tractography fiber clustering

Fan Zhang, Ye Wu, Isaiah Norton, Yogesh Rathi, Alexandra J Golby, Lauren J O'Donnell

Human brain mapping, 2019

Conference

White matter parcellation test-retest reproducibility of diffusion MRI tractography fiber clustering

Fan Zhang, Ye Wu, Isaiah Norton, Alexandra J. Rathi, Yogesh, Golby, Lauren J. O'Donnell

Proceedings of the International Society of Magnetic Resonance in Medicine (ISMRM), 2019

Conference

Tissue segmentation using sparse non-negative matrix factorization of spherical mean diffusion MRI data

Peng Sun, Ye Wu, Geng Chen, Jun Wu, Dinggang Shen, Pew-Thian Yap

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2019

Conference

Longitudinal Harmonization for Improving Tractography in Baby Diffusion MRI

Khoi Minh Huynh, Jaeil Kim, Geng Chen, Ye Wu, Dinggang Shen, Pew-Thian Yap

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2019

Conference

Asymmetry spectrum imaging for baby diffusion tractography

Ye Wu, Weili Lin, Dinggang Shen, Pew-Thian Yap, UNC/UMN Baby Connectome Project Consortium

International Conference on Information Processing in Medical Imaging, 2019

Conference

DeepBundle: fiber bundle parcellation with graph convolution neural networks

Feihong Liu, Jun Feng, Geng Chen, Ye Wu, Yoonmi Hong, Pew-Thian Yap, Dinggang Shen

International Workshop on Graph Learning in Medical Imaging, 2019

Conference

Automated Parcellation of the Cortex Using Structural Connectome Harmonics

Hoyt Patrick Taylor IV, Zhengwang Wu, Ye Wu, Dinggang Shen, Han Zhang, Pew-Thian Yap

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2019

Conference

Probing brain micro-architecture by orientation distribution invariant identification of diffusion compartments

Khoi Minh Huynh, Tiantian Xu, Ye Wu, Geng Chen, Kim-Han Thung, Haiyong Wu, Weili Lin, Dinggang Shen, Pew-Thian Yap, UNC/UMN Baby Connectome Project Consortium

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2019

Conference

Characterizing non-gaussian diffusion in heterogeneously oriented tissue microenvironments

Khoi Minh Huynh, Tiantian Xu, Ye Wu, Kim-Han Thung, Geng Chen, Weili Lin, Dinggang Shen, Pew-Thian Yap

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2019

Conference

Dynamic routing capsule networks for mild cognitive impairment diagnosis

Zhicheng Jiao, Pu Huang, Tae-Eui Kam, Li-Ming Hsu, Ye Wu, Han Zhang, Dinggang Shen

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2019

Conference

Early development of infant brain complex network

Weixiong Jiang, Han Zhang, Li-Ming Hsu, Dan Hu, Guoshi Li, Ye Wu, Dinggang Shen

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2019

Conference

Identification of abnormal circuit dynamics in major depressive disorder via multiscale neural modeling of resting-state fMRI

Guoshi Li, Yujie Liu, Yanting Zheng, Ye Wu, Pew-Thian Yap, Shijun Qiu, Han Zhang, Dinggang Shen

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2019

Journal

Author Correction: The challenge of mapping the human connectome based on diffusion tractography

Klaus H Maier-Hein, Peter F Neher, Jean-Christophe Houde, Côme Poulin

Nature communications, 2019

Journal

P4-287: PREDICTION OF 7-YEAR PROGRESSION FROM SUBJECTIVE COGNITIVE DECLINE TO MCI: EVIDENCE FROM THE CHINA LONGITUDINAL AGEING STUDY (CLAS)

Ling Yue, Dan Hu, Han Zhang, Junhao Wen, Ye Wu, Tao Wang, Dinggang Shen, Shifu Xiao

Alzheimer's & Dementia, 2019

Journal

Computational Diffusion MRI

Elisenda Bonet-Carne, F Grussu, Lipeng Ning, F Sepehrband, CMW Tax

Springer International Publishing, 2019

Conference

Tissue Segmentation Using Sparse Non-negative Matrix Factorization

Peng Sun, Ye Wu, Geng Chen, Jun Wu, Dinggang Shen, Pew-Thian Yap

Computational Diffusion MRI: International MICCAI Workshop, Granada, Spain, September 2018, 2019

Journal

The challenge of mapping the human connectome based on diffusion tractography (vol 8, 1349, 2017)

Klaus H Maier-Hein, Peter F Neher, Jean-Christophe Houde, Marc-Alexandre Cote, Eleftherios Garyfallidis, Jidan Zhong, Maxime Chamberland, Fang-Cheng Yeh, Ying-Chia Lin, Qing Ji, others

Nature Communications, 2019

2018

Conference

Asymmetric Orientation Distributions Mitigate Gyral Bias in Cortical Tractography

Ye Wu, Yuanjing Feng, Dinggang Shen, Pew-Thian Yap

OHBM, Singapore, 17-21 June, 2018, 2018

Conference

A data-driven groupwise fiber clustering atlas for consistent white matter parcellation and anatomical tract identification of subjects across the lifespan

F Zhang, Y Wu, I Norton, Y Rathi, N Makris, LJ O’Donnell

In: Annual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM), 2018

Journal

Investigation into local white matter abnormality in emotional processing and sensorimotor areas using an automatically annotated fiber clustering in major depressive disorder

Ye Wu, Fan Zhang, Nikos Makris, Yuping Ning, Isaiah Norton, Shenglin She, Hongjun Peng, Yogesh Rathi, Yuanjing Feng, Huawang Wu, others

NeuroImage, 2018

Journal

An anatomically curated fiber clustering white matter atlas for consistent white matter tract parcellation across the lifespan

Fan Zhang, Ye Wu, Isaiah Norton, Laura Rigolo, Yogesh Rathi, Nikos Makris, Lauren J O'Donnell

Neuroimage, 2018

Journal

Distributed performance of white matter properties in chess players: a DWI study using automated fiber quantification

Siqi Zhou, Liling Jin, Jianzhong He, Qingrun Zeng, Ye Wu, Zhewen Cao, Yuanjing Feng

Brain Research, 2018

Conference

A multi-tissue global estimation framework for asymmetric fiber orientation distributions

Ye Wu, Yuanjing Feng, Dinggang Shen, Pew-Thian Yap

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2018

Conference

Penalized geodesic tractography for mitigating gyral bias

Ye Wu, Yuanjing Feng, Dinggang Shen, Pew-Thian Yap

International Conference on Medical Image Computing and Computer-Assisted Intervention, 2018

Conference

A Data-driven Voxel-wise White Matter Fiber Clustering Model Based on Priori Anatomical Data

Zhewen Cao, Er Jin, Siqi Zhou, Ye Wu, Yongqiang Li, Yuanjing Feng

2018 IEEE 7th Data Driven Control and Learning Systems Conference (DDCLS), 2018

Journal

Norton Isaiah, Rigolo Laura, Rathi Yogesh, Makris Nikos, O’Donnell Lauren J. An anatomically curated fiber clustering white matter atlas for consistent white matter tract parcellation across the lifespan

Zhang Fan, Wu Ye

NeuroImage, 2018

Journal

Isaiah Norton, Laura Rigolo, Yogesh Rathi, Nikos Makris, and Lauren J O’Donnell. An anatomically curated fiber clustering white matter atlas for consistent white matter tract parcellation across the lifespan

Fan Zhang, Ye Wu

NeuroImage, 2018

2017

Journal

A novel Richardson-Lucy model with dictionary basis and spatial regularization for isolating isotropic signals

Tiantian Xu, Yuanjing Feng, Ye Wu, Qingrun Zeng, Jun Zhang, Jianzhong He, Qichuan Zhuge

Plos one, 2017

Journal

The challenge of mapping the human connectome based on diffusion tractography

Klaus H Maier-Hein, Peter F Neher, Jean-Christophe Houde, Côme Poulin

Nature communications, 2017

Conference

Real-time and authentic blood simulation for surgical training

Changsheng Xiao, Yuanjing Feng, Yongqiang Li, Qingrun Zeng, Jun Zhang, Ye Wu

2017 29th Chinese Control And Decision Conference (CCDC), 2017

Journal

The challenge of mapping the human connectome based on diffusion tractography. Nat Commun 8 (1): 1349

KH Maier-Hein, PF Neher, JC Houde, MA Cote, E Garyfallidis, J Zhong, M Chamberland, FC Yeh, YC Lin, Q Ji, others

, 2017

Conference

An improved mass spring model based on internal point set domain constraint

Jia-qing Hu, Yuan-jing Feng, Si-qi Zhou, Liang-peng Huang, Qing-run Zeng, Ye Wu, Yong-qiang Li

2017 29th Chinese Control And Decision Conference (CCDC), 2017

Journal

The challenge of mapping the human connectome based on diffusion tractography. Nat Commun 8: 1349

KH Maier-Hein, PF Neher, JC Houde, Côme Poulin

, 2017

Journal

Total Variation Based Spatial Brain Fiber Orientation Estimation

LI Fei, FENG Yuanjing, WU Ye

Journal of Systems Science and Mathematical Sciences, 2017

2016

Conference

Swarm tracking approach for global probabilistic tractography with spherical deconvolution

Chengfeng Gao, Yuanjing Feng, Ye Wu, Jun Zhang, Tiantian Xu, Zhejin Wang

2016 35th Chinese Control Conference (CCC), 2016

Conference

A self-adaptive local feature extraction based magnetic resonance imaging

Jun Zhang, Tiantian Xu, Yuanjing Feng, Ye Wu, Yongqiang Li, Jianzhong He, Siqi Zhou

2016 Chinese Control and Decision Conference (CCDC), 2016

Journal

Tractography-based connectomes are dominated by false-positive connections

Klaus H Maier-Hein, Peter Neher, Jean-Christophe Houde, Côme Poulin

biorxiv, 2016

Journal

Tractography-based connectomes are dominated by false-positive connections. bioRxiv

Klaus Maier-Hein, Peter Neher, Jean-Christophe Houde, Marc-Alexandre Cote, Eleftherios Garyfallidis, Jidan Zhong, Maxime Chamberland, Fang-Cheng Yeh, Ying Chia Lin, Qing Ji, others

Epub ahead of print, 2016

Journal

Patch-based techniques in medical imaging

Guorong Wu, Coup'e

Springer International Publishing Cham, 2016

2015

Conference

Global consistency spatial model for fiber orientation distribution estimation

Ye Wu, Yuanjing Feng, Fei Li, Carl Fredrik Westin

2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI), 2015

Journal

Sparse deconvolution of higher order tensor for fiber orientation distribution estimation

Yuanjing Feng, Ye Wu, Yogesh Rathi, Carl-Fredrik Westin

Artificial intelligence in medicine, 2015

Journal

A novel fiber orientation distribution reconstruction method based on dictionary basis function framework

Y Wu, YJ Feng, F Li, CF Gao

Chinese J Biomedical Eng, 2015, 34: 297, 2015

Journal

High-order tensor-diffusion MR sparse imaging based on compressed sensing

Feng Yuanjing, Wu Ye, Zhang Guijun, others

Pattern Recognition and Artificial Intelligence, 2015

2014

Conference

A new model-based spherical deconvolution method for multi-fiber reconstruction

Ye Wu, Youyou Xu, Yuanjing Feng, Chengfeng Gao, Fei Li

2014 9th IEEE Conference on Industrial Electronics and Applications, 2014

Journal

ESTIMATION OF FIBER ORIENTATION DISTRIBUTION WITH NON-NEGATIVE CONSTRAINTED HIGHER ORDER TENSOR DECONVOLUTION

XU Youyou, FENG Yuanjing, NIU Yanpen, WU Ye

Journal of Systems Science and Mathematical Sciences, 2014

0

Conference

Dense Mapping of Microstructural Development in the Human Brain During the First Two Years of Life

Khoi Minh Huynh, Ye Wu, Kim-Han Thung, Geng Chen, Weili Lin, Dinggang Shen, Pew-Thian Yap

Journal

The IronTract challenge: Validation and optimal tractography methods for the HCP diffusion acquisition scheme

Jonathan Rafael-Patino Barakovic, Thomas Yu, Gaël Rensonnet

Journal

Multivariate Quantification of Brain Development During the First Two Years of Life

Khoi Minh Huynh, Ye Wu, Kim-Han Thung, Sahar Ahmad, Hoyt Patrick Taylor IV, Weili Lin

Journal

Tackling Degeneracy in Linear Tensor Encoding Diffusion MRI

Khoi Minh Huynh, Ye Wu, Hoyt Patrick Taylor IV, Weili Lin, Pew-Thian Yap

Journal

Quantifying Intra-Soma Diffusion Properties via Spherical Mean Spectrum Imaging

Khoi Minh Huynh, Ye Wu, Kim-Han Thung, Sahar Ahmad, Hoyt Patrick Taylor IV, Weili Lin, Pew-Thian Yap

Journal

50-Fold Acceleration of Diffusion MRI via Slice-Interleaved Diffusion Encoding (SIDE)

Yoonmi Hong, Wei-Tang Chang, Geng Chen, Ye Wu, Weili Lin, Dinggang Shen, Pew-Thian Yap

Journal

New insights from the IronTract challenge: Simple post-processing enhances the accuracy of diffusion tractography

Mert E Yildiz, Ali Gholipour, Andrea Quattrone, Aldo Quattrone, Pew-Thian Yap, Alberto de Luca, Josien Pluim, Alexander Lemans, Vivek Prabhakaran, Barbara B Bendlin, others

Journal

Harmonization of Cortical Thickness Measurements Throughout the Human Lifespan

Sahar Ahmad, Fang Nan, Ye Wu, Zhengwang Wu, Weili Lin, Li Wang, Gang Li, Di Wu, Pew-Thian Yap

Journal

The Art, Science, and Secrets of Scanning Young Children

Brittany Howell, Douglas C Dean III

Journal

A Multimodal Atlas of the Human Cerebellum at 760 μm Resolution

Wenjiao Lyu, Ye Wu, Khoi Minh Huynh, Sahar Ahmad, Pew-Thian Yap

Journal

一种新的评估脑白质纤维形态变化的长度特征构建

董卫红, 秦姣龙, 倪黄晶, 罗丹丹, 吴烨, 姚志剑, 卢青

中国生物医学工程学报

Journal

Isaiah Norton, Yogesh Rathi, Alexandra J. Golby, and Lauren J. O’Donnell. 2019.“Test-Retest Reproducibility of White Matter Parcellation Using Diffusion MRI Tractography Fiber Clustering.”

Fan Zhang, Ye Wu

Human Brain Mapping

Journal

Oct. 2018. An anatomically curated fiber clustering white matter atlas for consistent white matter tract parcellation across the lifespan

Fan Zhang, Ye Wu, I Norton, L Rigolo, Y Rathi, N Makris, LJ O’Donnell

Neuroimage

Journal

Creation of a cross-population white matter atlas for concurrent mapping of brain connections between Eastern and Western populations

Yijie Li, Wei Zhang, Ye Wu, Li Yin, Yuqian Chen, Suheyla Cetin-Karayumak, Kang Ik Kevin Cho, Leo R Zekelman, Jarrett Rushmore, Yogesh Rathi, others

Journal

Uncertainty-Aware Anatomical Brain Parcellation using Diffusion MRI

Chenjun Li, Ye Wu, Le Zhang, Qiannuo Li, Shuyue Wang, Shun Yao, Kang Ik Kevin Cho, Johanna Seitz-Holland, Lipeng Ning, Jon Haitz Legarreta, others

Journal

Multi-scale convolutional adversarial autoencoder-based anomaly detector for lesion edge localization on diffusion MRI

Shuxin Cao, Tenglong Wang, Qingwei You, Yifei He, Jiaolong Qin, Ye Wu

Journal

Toward Anatomical Pathways Changes in the Brain During Pregnancy with A Novel Multi-Scale Shape Analysis Method

Yu Xie, Yifei He, Yazhe Zhai, Tenglong Wang, Jiahao Yu, Jiaolong Qin, Ye Wu

Journal

Jointly Multi-Model Microstructural Estimation on Diffusion MRI with Contextual Features Aggregation

Tenglong Wang, Jiahao Yu, Yu Xie, Yifei He, Yazhe Zhai, Jiaolong Qin, Ye Wu

Journal

Lesion detection in stroke patients based on intra-modality features on Diffusion MRI

Shuxin Cao, Yifei He, Tenglong Wang, Jiaolong Qin, Ye Wu

Journal

Neurite Microstructure Characterization in the Mouse Brain Using Relaxation-Diffusion MRI

Baoxing Ren, Ye Wu, Quan Tao, Yanqiu Feng, Xinyuan Zhang

Journal

Computational Diffusion MRI

Elisenda Bonet-Carne, Francesco Grussu, Lipeng Ning, Farshid Sepehrband, Chantal MW Tax

Springer

Journal

Explore the Heterogeneity in Gender Identity across Brain Morphology and Personality Traits

Hiuying Yip, Yifei He, Jiaolong Qin, Ye Wu

Journal

Multifaceted Atlas of Superficial White Matter Pathway Using Ultra-High-Field Diffusion MRI

Yifei He, Yoonmi Hong, Yu Xie, Tenglong Wang, Jiaolong Qin, Ye Wu

Journal

A Deep Diffusion Model Approach for Diffusion MRI White Matter Fiber Tractography

Yijie Li, Wei Zhang, Xi Zhu, Ye Wu, Yogesh Rathi, Lauren J O’Donnell, Fan Zhang

Journal

Automated Mapping of Cranial Nerves Pathways in Human Brain: A Multi-Parametric Multi-Stage Diffusion Tractography Atlas

Lei Xie, Qingrun Zeng, Ye Wu, Yuanjing Feng

Journal

Connectome-based consensus graph learning for fine-scale subcortical parcellation

Zhonghua Wan, Yu Xie, Yazhe Zhai, Lei Xie, Yifei He, Ye Wu

Journal

Integrating Jacobian Determinant and LDDMM for Evaluating White Matter

Zhaoxian Ming, Zhijian Yao, Yifei He, Yu Xie, Ye Wu, Jiaolong Qin